This dataset contains raw FASTQ files from the midbrain single-nucleus RNA sequencing (snRNAseq) dataset with hybrid selection for the matching PMDBS samples from the PD5D chort. The same subjects were also profiled with other omics assays including genomic DNAseq, genotyping, single-cell ATACseq, and spatial transcriptomics. ASAP Team: Scherzer Dataset Name: scherzer-pmdbs-sn-rnaseq-midbrain-hybsel, v1.0 Principal Investigator: Clemens Scherzer Co-Principal Investigator: Joshua Levin; Xianjun Dong Contributors: Kim, Kwanho; Lin, Zechuan; Simmons, Sean; Parker, Jacob; Kearney, Matthew; Liao, Zhixiang; Haywood, Nathan; Zhang, Jixiang; Cline, Madison; Tuncali, Idil; Sharma, Monika; Serrano, Geidy; Beach, Thomas; Dong, Xianjun; Popic, Victoria; Scherzer, Clemens; Levin, Joshua Sample Summary: Resources and Additional Information Protocols GitHub: https://github.com/seanken/ASE_pipeline Protocols: NA Dataset DOI: https://doi.org/10.5281/zenodo.19124469 Associated Publications: NA CRN Cloud GitHub: https://github.com/ASAP-CRN CRN Cloud Data Dictionary: https://storage.googleapis.com/asap-public-assets/wayfinding/ASAP-CRN-Cloud-Data-Dictionary.pdf CRN Cloud Release Number: v4.1.1 CRN...
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PD5D midbrain single-nucleus RNA-seq hybrid selection is published on ASAP CRN Cloud.