Bulk RNA-seq of mouse substantia nigra of wild type and PINK1 KO mice after C.rodentium infectionWe performed bulk RNAsequencing of substantia nigra from wild type and PINK1 KO mice 26-days post C.rodentium infection. This dataset contains raw fastq files from striatal cells, sorted into 4 groups namely wild type and PINK1 KO uninfected and infected mice. Sequencing was performed using NextSeq500. FASTQs generated from sequencing output were aligned to the mm10 reference genome using STAR aligner. ASAP Team: Desjardins Dataset Name: desjardins-mouse-bulk-rnaseq-nigra-pink1, v1.0 Principal Investigator: Michel Desjardins Co-Principal Investigator: Jo Stratton Contributors: Stratton, Jo Anne; Mukherjee, Sriparna; Trudeau, Louis-Eric Sample Summary: Resources and Additional Information Protocols GitHub: https://github.com/myaqubi/asap-team-desjardins-mouse-bulk-rna/tree/main Protocols: NA Dataset DOI: https://doi.org/10.5281/zenodo.20276416 Associated Publications: NA CRN Cloud GitHub: https://github.com/ASAP-CRN CRN Cloud Data Dictionary: https://storage.googleapis.com/asap-public-assets/wayfinding/ASAP-CRN-Cloud-Data-Dictionary.pdf CRN Cloud Release Number: v5.1.0 CRN Cloud DOI: https://doi.org/10.5281/zenodo.8384742 CDE Schema Version: v4.5 Verily Workbench is the...Access requires approval by the data custodian. The collection's description and structure are public; querying the data requires an approved request.Bulk RNA-seq of mouse substantia nigra of wild type and PINK1 KO mice after C.rodentium infection is published on ASAP CRN Cloud.